CRAN Package Check Results for Maintainer ‘Hans Kestler <hans.kestler at uni-ulm.de>’

Last updated on 2024-06-25 22:49:15 CEST.

Package NOTE OK
Binarize 5 8
BiTrinA 5 8
BoolNet 10 3
MOCCA 13
ORION 13
TunePareto 13

Package Binarize

Current CRAN status: NOTE: 5, OK: 8

Version: 1.3.1
Check: compiled code
Result: NOTE File ‘Binarize/libs/Binarize.so’: Found non-API call to R: ‘SET_TYPEOF’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.1
Check: compiled code
Result: NOTE File 'Binarize/libs/x64/Binarize.dll': Found non-API call to R: 'SET_TYPEOF' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Package BiTrinA

Current CRAN status: NOTE: 5, OK: 8

Version: 1.3.1
Check: compiled code
Result: NOTE File ‘BiTrinA/libs/BiTrinA.so’: Found non-API call to R: ‘SET_TYPEOF’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.1
Check: compiled code
Result: NOTE File 'BiTrinA/libs/x64/BiTrinA.dll': Found non-API call to R: 'SET_TYPEOF' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual. Flavor: r-devel-windows-x86_64

Package BoolNet

Current CRAN status: NOTE: 10, OK: 3

Version: 2.1.9
Check: Rd files
Result: NOTE checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup? 23 | Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state. | ^ checkRd: (-1) plotSequence.Rd:42: Lost braces; missing escapes or markup? 42 | Specifies whether the actual attractor states are included in the plot or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) sequenceToLaTeX.Rd:37: Lost braces; missing escapes or markup? 37 | Specifies whether the actual attractor states are included in the table or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup? 131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies. | ^ checkRd: (-1) testNetworkProperties.Rd:140: Lost braces 140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package MOCCA

Current CRAN status: OK: 13

Package ORION

Current CRAN status: OK: 13

Package TunePareto

Current CRAN status: OK: 13