Last updated on 2024-10-16 22:49:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 24.39 | 346.04 | 370.43 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 20.27 | 249.08 | 269.35 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 612.06 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 620.57 | OK | |||
| r-devel-windows-x86_64 | 1.2.0 | 30.00 | 302.00 | 332.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | ERROR | ||||
| r-release-linux-x86_64 | 1.2.0 | 25.34 | 315.84 | 341.18 | OK | |
| r-release-macos-arm64 | 1.2.0 | 165.00 | OK | |||
| r-release-macos-x86_64 | 1.2.0 | 264.00 | OK | |||
| r-release-windows-x86_64 | 1.2.0 | 26.00 | 295.00 | 321.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 184.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.0 | 381.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.0 | 38.00 | 388.00 | 426.00 | OK |
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [38s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(causalBatch)
>
> test_check("causalBatch")
Found2batches
Adjusting for1covariate(s) or covariate level(s)
Standardizing Data across genes
Fitting L/S model and finding priors
Finding parametric adjustments
Adjusting the Data
Found2batches
Adjusting for1covariate(s) or covariate level(s)
Standardizing Data across genes
Fitting L/S model and finding priors
Finding parametric adjustments
Adjusting the Data
Loading required package: ks
Attaching package: 'ks'
The following object is masked from 'package:testthat':
compare
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 37 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-causal_cdcorr.R:31:3', 'test-causal_cdcorr.R:46:3',
'test-causal_cdcorr.R:89:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-causal_cdcorr.R:122:3'): raises warning when few samples are retained ──
Error in `cb.align.vm_trim(Ts, Xs, retain.ratio = retain.ratio, ddx = ddx)`: No samples retained by vector matching.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-causal_cdcorr.R:122:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─causalBatch::cb.detect.caus_cdcorr(...)
8. └─causalBatch::cb.align.vm_trim(...)
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 37 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64