Last updated on 2024-07-13 05:49:38 CEST.
| Package | NOTE | OK |
|---|---|---|
| dartR | 11 | 2 |
| dartR.base | 5 | 8 |
| dartR.captive | 1 | 12 |
| dartR.data | 8 | 5 |
| dartR.popgen | 1 | 12 |
| dartR.spatial | 1 | 12 |
| dartRverse | 13 | |
| PopGenReport | 1 | 12 |
Current CRAN status: NOTE: 11, OK: 2
Version: 2.9.7
Check: Rd files
Result: NOTE
checkRd: (-1) gl.filter.maf.Rd:7: Lost braces; missing escapes or markup?
7 | {adegenet} object}
| ^
checkRd: (-1) gl.pcoa.Rd:68: Lost braces; missing escapes or markup?
68 | The function is essentially a wrapper for glPca {adegenet} or pcoa \{ape\}
| ^
checkRd: (-1) gl.play.history.Rd:17: Lost braces
17 | code{x2@other$history[c(1,4,5)]}). [optional].}
| ^
checkRd: (-1) utils.jackknife.Rd:49: Lost braces
49 | bold{Note} that when n is very small, jackknife resampling is not recommended.
| ^
checkRd: (-1) utils.jackknife.Rd:51: Lost braces
51 | Parallel computation is implemented. The argument code{n.cores} indicates the
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 2.9.7
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
gl.genleastcost.Rd: landgenreport, popgenreport, wassermann, lgrMMRR
utils.dart2genlight.Rd: adegenet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 2.9.7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Version: 2.9.7
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.65
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
utils.dart2genlight.Rd: adegenet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Version: 0.65
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
R 2.0Mb
help 2.2Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.65
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Version: 0.65
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 1, OK: 12
Version: 0.75
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
gl.filter.parent.offspring.Rd: gl.report.rdepth,
gl.report.reproducibility
gl.report.parent.offspring.Rd: gl.report.rdepth,
gl.report.reproducibility
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 8, OK: 5
Version: 1.0.8
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 4.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.0.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Version: 1.0.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 1, OK: 12
Version: 0.78
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
gl.spatial.autoCorr.Rd: gl.propShared, gl.dist.ind
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 1, OK: 12
Version: 3.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
allel.rich.Rd: genind
allele.dist.Rd: genind
bilby.Rd: genind
gd.kosman.Rd: genind
gd.smouse.Rd: genind
genleastcost.Rd: gdistance, rSPDistance
landgenreport.Rd: gdistance, rSPDistance
null.all.Rd: genind
popgenreport.Rd: genind, import2genind, df2genind, read.fstat,
read.structure, read.genetix, read.genepop, Mercator, dismo, knitr,
adegenet, pegas, mmod
read.genetable.Rd: genind-class, adegenet, import2genind, df2genind,
read.fstat, read.structure, read.genetix, read.genepop
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-windows-x86_64