Last updated on 2024-06-21 15:53:12 CEST.
| Package | ERROR | OK |
|---|---|---|
| pastclim | 13 | |
| tidysdm | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, OK: 10
Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24420 bytes
Input file size = 24522 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497
Output IDAT size = 18497 bytes (5923 bytes decrease)
Output file size = 18575 bytes (5947 bytes = 24.25% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26290 bytes
Input file size = 26404 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760
Output IDAT size = 19760 bytes (6530 bytes decrease)
Output file size = 19838 bytes (6566 bytes = 24.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23579 bytes
Input file size = 23681 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846
Output IDAT size = 17846 bytes (5733 bytes decrease)
Output file size = 17924 bytes (5757 bytes = 24.31% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52787 bytes
Input file size = 52937 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441
Output IDAT size = 38441 bytes (14346 bytes decrease)
Output file size = 38519 bytes (14418 bytes = 27.24% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png
672x1056 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 116119 bytes
Input file size = 116365 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058
Output IDAT size = 102058 bytes (14061 bytes decrease)
Output file size = 102136 bytes (14229 bytes = 12.23% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 138515 bytes
Input file size = 138785 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
Output IDAT size = 101422 bytes (37093 bytes decrease)
Output file size = 101500 bytes (37285 bytes = 26.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 72790 bytes
Input file size = 72964 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020
Output IDAT size = 63020 bytes (9770 bytes decrease)
Output file size = 63098 bytes (9866 bytes = 13.52% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32170 bytes
Input file size = 32284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299
Output IDAT size = 25299 bytes (6871 bytes decrease)
Output file size = 25377 bytes (6907 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28366 bytes
Input file size = 28480 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741
Output IDAT size = 22741 bytes (5625 bytes decrease)
Output file size = 22819 bytes (5661 bytes = 19.88% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31387 bytes
Input file size = 31501 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396
Output IDAT size = 26396 bytes (4991 bytes decrease)
Output file size = 26474 bytes (5027 bytes = 15.96% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32059 bytes
Input file size = 32173 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008
Output IDAT size = 27008 bytes (5051 bytes decrease)
Output file size = 27086 bytes (5087 bytes = 15.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25853 bytes
Input file size = 25967 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519
Output IDAT size = 19519 bytes (6334 bytes decrease)
Output file size = 19597 bytes (6370 bytes = 24.53% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20506 bytes
Input file size = 20608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790
Output IDAT size = 17790 bytes (2716 bytes decrease)
Output file size = 17868 bytes (2740 bytes = 13.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5039 bytes
Input file size = 5894 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490
Output IDAT size = 4490 bytes (549 bytes decrease)
Output file size = 4568 bytes (1326 bytes = 22.50% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20534 bytes
Input file size = 20636 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009
Output IDAT size = 18009 bytes (2525 bytes decrease)
Output file size = 18087 bytes (2549 bytes = 12.35% decrease)
--- finished re-building ‘a0_tidysdm_overview.Rmd’
--- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown
Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd)
Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics:
Discrete values supplied to continuous scale.
ℹ Example values: NA, NA, NA, NA, and NA
--- failed re-building ‘a1_palaeodata_application.Rmd’
--- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18878 bytes
Input file size = 18980 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16033
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16033
Output IDAT size = 16033 bytes (2845 bytes decrease)
Output file size = 16111 bytes (2869 bytes = 15.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20584 bytes
Input file size = 20686 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279
Output IDAT size = 16279 bytes (4305 bytes decrease)
Output file size = 16357 bytes (4329 bytes = 20.93% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34598 bytes
Input file size = 34724 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003
Output IDAT size = 28003 bytes (6595 bytes decrease)
Output file size = 28081 bytes (6643 bytes = 19.13% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66937 bytes
Input file size = 67111 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145
Output IDAT size = 55145 bytes (11792 bytes decrease)
Output file size = 55223 bytes (11888 bytes = 17.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 61229 bytes
Input file size = 61391 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784
Output IDAT size = 52784 bytes (8445 bytes decrease)
Output file size = 52862 bytes (8529 bytes = 13.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18566 bytes
Input file size = 18668 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190
Output IDAT size = 14190 bytes (4376 bytes decrease)
Output file size = 14268 bytes (4400 bytes = 23.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13856 bytes
Input file size = 13946 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836
Output IDAT size = 11836 bytes (2020 bytes decrease)
Output file size = 11914 bytes (2032 bytes = 14.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29019 bytes
Input file size = 29133 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469
Output IDAT size = 24469 bytes (4550 bytes decrease)
Output file size = 24547 bytes (4586 bytes = 15.74% decrease)
--- finished re-building ‘a2_tidymodels_additions.Rmd’
--- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘a3_troubleshooting.Rmd’
SUMMARY: processing the following file failed:
‘a1_palaeodata_application.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24828 bytes
Input file size = 24942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844
Output IDAT size = 18844 bytes (5984 bytes decrease)
Output file size = 18922 bytes (6020 bytes = 24.14% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26478 bytes
Input file size = 26592 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788
Output IDAT size = 19788 bytes (6690 bytes decrease)
Output file size = 19866 bytes (6726 bytes = 25.29% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23877 bytes
Input file size = 23979 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954
Output IDAT size = 17954 bytes (5923 bytes decrease)
Output file size = 18032 bytes (5947 bytes = 24.80% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52301 bytes
Input file size = 52451 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318
Output IDAT size = 38318 bytes (13983 bytes decrease)
Output file size = 38396 bytes (14055 bytes = 26.80% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png
672x1056 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 116078 bytes
Input file size = 116324 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055
Output IDAT size = 102055 bytes (14023 bytes decrease)
Output file size = 102133 bytes (14191 bytes = 12.20% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 138515 bytes
Input file size = 138785 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
Output IDAT size = 101422 bytes (37093 bytes decrease)
Output file size = 101500 bytes (37285 bytes = 26.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 72189 bytes
Input file size = 72363 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003
Output IDAT size = 62003 bytes (10186 bytes decrease)
Output file size = 62081 bytes (10282 bytes = 14.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31658 bytes
Input file size = 31772 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25126
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25126
Output IDAT size = 25126 bytes (6532 bytes decrease)
Output file size = 25204 bytes (6568 bytes = 20.67% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30057 bytes
Input file size = 30171 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23841
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23841
Output IDAT size = 23841 bytes (6216 bytes decrease)
Output file size = 23919 bytes (6252 bytes = 20.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31186 bytes
Input file size = 31300 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26419
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26419
Output IDAT size = 26419 bytes (4767 bytes decrease)
Output file size = 26497 bytes (4803 bytes = 15.35% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31833 bytes
Input file size = 31947 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785
Output IDAT size = 26785 bytes (5048 bytes decrease)
Output file size = 26863 bytes (5084 bytes = 15.91% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25783 bytes
Input file size = 25897 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19551
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19551
Output IDAT size = 19551 bytes (6232 bytes decrease)
Output file size = 19629 bytes (6268 bytes = 24.20% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20171 bytes
Input file size = 20273 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17738
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17738
Output IDAT size = 17738 bytes (2433 bytes decrease)
Output file size = 17816 bytes (2457 bytes = 12.12% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5050 bytes
Input file size = 5908 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4445
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4440
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4440
Output IDAT size = 4440 bytes (610 bytes decrease)
Output file size = 4518 bytes (1390 bytes = 23.53% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20186 bytes
Input file size = 20288 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803
Output IDAT size = 17803 bytes (2383 bytes decrease)
Output file size = 17881 bytes (2407 bytes = 11.86% decrease)
--- finished re-building ‘a0_tidysdm_overview.Rmd’
--- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown
Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd)
Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics:
Discrete values supplied to continuous scale.
ℹ Example values: NA, NA, NA, NA, and NA
--- failed re-building ‘a1_palaeodata_application.Rmd’
--- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18673 bytes
Input file size = 18775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15849
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15849
Output IDAT size = 15849 bytes (2824 bytes decrease)
Output file size = 15927 bytes (2848 bytes = 15.17% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20580 bytes
Input file size = 20682 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286
Output IDAT size = 16286 bytes (4294 bytes decrease)
Output file size = 16364 bytes (4318 bytes = 20.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34616 bytes
Input file size = 34742 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020
Output IDAT size = 28020 bytes (6596 bytes decrease)
Output file size = 28098 bytes (6644 bytes = 19.12% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66695 bytes
Input file size = 66869 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085
Output IDAT size = 55085 bytes (11610 bytes decrease)
Output file size = 55163 bytes (11706 bytes = 17.51% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60837 bytes
Input file size = 60999 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935
Output IDAT size = 51935 bytes (8902 bytes decrease)
Output file size = 52013 bytes (8986 bytes = 14.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18541 bytes
Input file size = 18643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14183
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14183
Output IDAT size = 14183 bytes (4358 bytes decrease)
Output file size = 14261 bytes (4382 bytes = 23.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13917 bytes
Input file size = 14007 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11875
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11875
Output IDAT size = 11875 bytes (2042 bytes decrease)
Output file size = 11953 bytes (2054 bytes = 14.66% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28407 bytes
Input file size = 28521 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24126
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24126
Output IDAT size = 24126 bytes (4281 bytes decrease)
Output file size = 24204 bytes (4317 bytes = 15.14% decrease)
--- finished re-building ‘a2_tidymodels_additions.Rmd’
--- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘a3_troubleshooting.Rmd’
SUMMARY: processing the following file failed:
‘a1_palaeodata_application.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24828 bytes
Input file size = 24942 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844
Output IDAT size = 18844 bytes (5984 bytes decrease)
Output file size = 18922 bytes (6020 bytes = 24.14% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26478 bytes
Input file size = 26592 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788
Output IDAT size = 19788 bytes (6690 bytes decrease)
Output file size = 19866 bytes (6726 bytes = 25.29% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23877 bytes
Input file size = 23979 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954
Output IDAT size = 17954 bytes (5923 bytes decrease)
Output file size = 18032 bytes (5947 bytes = 24.80% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52301 bytes
Input file size = 52451 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318
Output IDAT size = 38318 bytes (13983 bytes decrease)
Output file size = 38396 bytes (14055 bytes = 26.80% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png
672x1056 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 116078 bytes
Input file size = 116324 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055
Output IDAT size = 102055 bytes (14023 bytes decrease)
Output file size = 102133 bytes (14191 bytes = 12.20% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 138515 bytes
Input file size = 138785 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422
Output IDAT size = 101422 bytes (37093 bytes decrease)
Output file size = 101500 bytes (37285 bytes = 26.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 72189 bytes
Input file size = 72363 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003
Output IDAT size = 62003 bytes (10186 bytes decrease)
Output file size = 62081 bytes (10282 bytes = 14.21% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32170 bytes
Input file size = 32284 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299
Output IDAT size = 25299 bytes (6871 bytes decrease)
Output file size = 25377 bytes (6907 bytes = 21.39% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png
672x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28366 bytes
Input file size = 28480 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741
Output IDAT size = 22741 bytes (5625 bytes decrease)
Output file size = 22819 bytes (5661 bytes = 19.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31108 bytes
Input file size = 31222 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26242
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26242
Output IDAT size = 26242 bytes (4866 bytes decrease)
Output file size = 26320 bytes (4902 bytes = 15.70% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31833 bytes
Input file size = 31947 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785
Output IDAT size = 26785 bytes (5048 bytes decrease)
Output file size = 26863 bytes (5084 bytes = 15.91% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25820 bytes
Input file size = 25934 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19549
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19549
Output IDAT size = 19549 bytes (6271 bytes decrease)
Output file size = 19627 bytes (6307 bytes = 24.32% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20189 bytes
Input file size = 20291 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17601
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17601
Output IDAT size = 17601 bytes (2588 bytes decrease)
Output file size = 17679 bytes (2612 bytes = 12.87% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5039 bytes
Input file size = 5894 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490
Output IDAT size = 4490 bytes (549 bytes decrease)
Output file size = 4568 bytes (1326 bytes = 22.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20186 bytes
Input file size = 20288 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803
Output IDAT size = 17803 bytes (2383 bytes decrease)
Output file size = 17881 bytes (2407 bytes = 11.86% decrease)
--- finished re-building ‘a0_tidysdm_overview.Rmd’
--- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown
Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd)
Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics:
Discrete values supplied to continuous scale.
ℹ Example values: NA, NA, NA, NA, and NA
--- failed re-building ‘a1_palaeodata_application.Rmd’
--- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18679 bytes
Input file size = 18781 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15815
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15815
Output IDAT size = 15815 bytes (2864 bytes decrease)
Output file size = 15893 bytes (2888 bytes = 15.38% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20580 bytes
Input file size = 20682 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286
Output IDAT size = 16286 bytes (4294 bytes decrease)
Output file size = 16364 bytes (4318 bytes = 20.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 34616 bytes
Input file size = 34742 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020
Output IDAT size = 28020 bytes (6596 bytes decrease)
Output file size = 28098 bytes (6644 bytes = 19.12% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 66695 bytes
Input file size = 66869 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085
Output IDAT size = 55085 bytes (11610 bytes decrease)
Output file size = 55163 bytes (11706 bytes = 17.51% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60837 bytes
Input file size = 60999 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935
Output IDAT size = 51935 bytes (8902 bytes decrease)
Output file size = 52013 bytes (8986 bytes = 14.73% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18566 bytes
Input file size = 18668 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190
Output IDAT size = 14190 bytes (4376 bytes decrease)
Output file size = 14268 bytes (4400 bytes = 23.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13856 bytes
Input file size = 13946 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836
Output IDAT size = 11836 bytes (2020 bytes decrease)
Output file size = 11914 bytes (2032 bytes = 14.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28356 bytes
Input file size = 28470 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24035
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24035
Output IDAT size = 24035 bytes (4321 bytes decrease)
Output file size = 24113 bytes (4357 bytes = 15.30% decrease)
--- finished re-building ‘a2_tidymodels_additions.Rmd’
--- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown
--- finished re-building ‘a3_troubleshooting.Rmd’
SUMMARY: processing the following file failed:
‘a1_palaeodata_application.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc