Last updated on 2024-06-27 16:49:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.1 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 0.4.2 | 7.28 | 84.03 | 91.31 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.2 | 140.64 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.2 | 162.46 | OK | |||
| r-devel-windows-x86_64 | 0.4.2 | 11.00 | 114.00 | 125.00 | OK | |
| r-patched-linux-x86_64 | 0.4.2 | 5.91 | 110.71 | 116.62 | ERROR | |
| r-release-linux-x86_64 | 0.4.1 | 4.21 | 93.26 | 97.47 | OK | |
| r-release-macos-arm64 | 0.4.2 | 52.00 | OK | |||
| r-release-macos-x86_64 | 0.4.2 | 116.00 | OK | |||
| r-release-windows-x86_64 | 0.4.2 | 9.00 | 112.00 | 121.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.2 | 68.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.4.2 | 113.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.4.2 | 13.00 | 119.00 | 132.00 | OK |
Version: 0.4.2
Check: examples
Result: ERROR
Running examples in ‘FAIRmaterials-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: process_ontology_files
> ### Title: Process Ontology CSV Files
> ### Aliases: process_ontology_files
>
> ### ** Examples
>
> # Process the CSV files in the XRay folder
> example_folder1 <- system.file("extdata", "XRay", package = "FAIRmaterials")
> process_ontology_files(example_folder1, add_external_onto_info = FALSE)
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
Error in write_xml.xml_document(xml2::read_xml(svg_code), svg_path) :
Error closing file
Calls: process_ontology_files ... process_files -> <Anonymous> -> write_xml.xml_document
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.4.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(FAIRmaterials)
>
> test_check("FAIRmaterials")
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_ontology_files.R:8:3'): The output files are correctly generated for PV data ──
Error in `write_xml.xml_document(xml2::read_xml(svg_code), svg_path)`: Error closing file
Backtrace:
▆
1. └─FAIRmaterials::process_ontology_files(pv_test_folder, add_external_onto_info = FALSE) at test-process_ontology_files.R:8:3
2. └─FAIRmaterials:::process_files(...)
3. ├─xml2::write_xml(xml2::read_xml(svg_code), svg_path)
4. └─xml2:::write_xml.xml_document(xml2::read_xml(svg_code), svg_path)
── Error ('test-process_ontology_files.R:28:3'): The output files are correctly generated for XRay data ──
Error in `write_xml.xml_document(xml2::read_xml(svg_code), svg_path)`: Error closing file
Backtrace:
▆
1. └─FAIRmaterials::process_ontology_files(xray_test_folder, add_external_onto_info = FALSE) at test-process_ontology_files.R:28:3
2. └─FAIRmaterials:::process_files(...)
3. ├─xml2::write_xml(xml2::read_xml(svg_code), svg_path)
4. └─xml2:::write_xml.xml_document(xml2::read_xml(svg_code), svg_path)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [30s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(FAIRmaterials)
>
> test_check("FAIRmaterials")
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
librdf error - XML I/O error: Read-only file system
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_ontology_files.R:8:3'): The output files are correctly generated for PV data ──
Error in `write_xml.xml_document(xml2::read_xml(svg_code), svg_path)`: Error closing file
Backtrace:
▆
1. └─FAIRmaterials::process_ontology_files(pv_test_folder, add_external_onto_info = FALSE) at test-process_ontology_files.R:8:3
2. └─FAIRmaterials:::process_files(...)
3. ├─xml2::write_xml(xml2::read_xml(svg_code), svg_path)
4. └─xml2:::write_xml.xml_document(xml2::read_xml(svg_code), svg_path)
── Error ('test-process_ontology_files.R:28:3'): The output files are correctly generated for XRay data ──
Error in `write_xml.xml_document(xml2::read_xml(svg_code), svg_path)`: Error closing file
Backtrace:
▆
1. └─FAIRmaterials::process_ontology_files(xray_test_folder, add_external_onto_info = FALSE) at test-process_ontology_files.R:28:3
2. └─FAIRmaterials:::process_files(...)
3. ├─xml2::write_xml(xml2::read_xml(svg_code), svg_path)
4. └─xml2:::write_xml.xml_document(xml2::read_xml(svg_code), svg_path)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64