Last updated on 2024-07-13 17:56:12 CEST.
| Package | ERROR | OK |
|---|---|---|
| viraldomain | 9 | 4 |
| viralmodels | 13 | |
| viralx | 13 |
Current CRAN status: ERROR: 9, OK: 4
Version: 0.0.3
Check: examples
Result: ERROR
Running examples in ‘viraldomain-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: normalized_domain_plot
> ### Title: Create a Normalized Domain Plot
> ### Aliases: normalized_domain_plot
>
> ### ** Examples
>
> data(viral)
> data(sero)
> # Adding "jitter_" prefix to original variable
> features <- list(
+ featured_col = "jittered_cd_2022",
+ features_vl = "vl_2022",
+ features_cd = "cd_2022"
+ )
> train_data = viral |>
+ dplyr::select("cd_2022", "vl_2022")
> test_data = sero
> treshold_value = 0.99
> impute_hyperparameters = list(indetect = 40, tasa_exp = 1/13, semi = 123)
> normalized_domain_plot(features, train_data, test_data, treshold_value, impute_hyperparameters)
Error in `recipes::prep()`:
✖ The following variables have the wrong attributes:
`jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For
`rec` being the name of your recipe.
Backtrace:
▆
1. └─viraldomain::normalized_domain_plot(...)
2. ├─applicable::autoplot.apd_pca(...)
3. ├─applicable::apd_pca(...)
4. └─applicable:::apd_pca.recipe(...)
5. ├─hardhat::mold(x, data)
6. └─hardhat:::mold.recipe(x, data)
7. ├─hardhat::run_mold(blueprint, data = data)
8. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
9. └─hardhat:::mold_recipe_default_process(...)
10. ├─recipes::prep(...)
11. └─recipes:::prep.recipe(...)
12. └─recipes:::check_training_set(training, x, fresh)
13. └─recipes::recipes_ptype_validate(...)
14. └─cli::cli_abort(msg, call = call)
15. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.3
Check: examples
Result: ERROR
Running examples in ‘viraldomain-Ex.R’ failed
The error most likely occurred in:
> ### Name: normalized_domain_plot
> ### Title: Create a Normalized Domain Plot
> ### Aliases: normalized_domain_plot
>
> ### ** Examples
>
> data(viral)
> data(sero)
> # Adding "jitter_" prefix to original variable
> features <- list(
+ featured_col = "jittered_cd_2022",
+ features_vl = "vl_2022",
+ features_cd = "cd_2022"
+ )
> train_data = viral |>
+ dplyr::select("cd_2022", "vl_2022")
> test_data = sero
> treshold_value = 0.99
> impute_hyperparameters = list(indetect = 40, tasa_exp = 1/13, semi = 123)
> normalized_domain_plot(features, train_data, test_data, treshold_value, impute_hyperparameters)
Error in `recipes::prep()`:
✖ The following variables have the wrong attributes:
`jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For
`rec` being the name of your recipe.
Backtrace:
▆
1. └─viraldomain::normalized_domain_plot(...)
2. ├─applicable::autoplot.apd_pca(...)
3. ├─applicable::apd_pca(...)
4. └─applicable:::apd_pca.recipe(...)
5. ├─hardhat::mold(x, data)
6. └─hardhat:::mold.recipe(x, data)
7. ├─hardhat::run_mold(blueprint, data = data)
8. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
9. └─hardhat:::mold_recipe_default_process(...)
10. ├─recipes::prep(...)
11. └─recipes:::prep.recipe(...)
12. └─recipes:::check_training_set(training, x, fresh)
13. └─recipes::recipes_ptype_validate(...)
14. └─cli::cli_abort(msg, call = call)
15. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(viraldomain)
>
> test_check("viraldomain")
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-knn_domain_score.R:12:3', 'test-mars_domain_score.R:80:3',
'test-nn_domain_score.R:80:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-normalized_domain_plot.R:18:3'): `normalized_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-normalized_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::normalized_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
── Error ('test-simple_domain_plot.R:18:3'): `simple_domain_plot()` plots as expected ──
Error in `recipes::prep(blueprint$recipe, training = training, fresh = blueprint$fresh,
strings_as_factors = blueprint_strings_as_factors(blueprint))`: x The following variables have the wrong attributes: `jittered_log10_imputed_vl_2022` and `jittered_cd_2022`.
Run `lapply(recipes_ptype(rec), attributes)` to see expected attributes. For `rec` being the name of your recipe.
Backtrace:
▆
1. ├─vdiffr::expect_doppelganger(...) at test-simple_domain_plot.R:18:3
2. │ └─vdiffr (local) writer(fig, testcase, title)
3. │ └─vdiffr:::print_plot(plot, title)
4. └─viraldomain::simple_domain_plot(...)
5. ├─applicable::autoplot.apd_pca(...)
6. ├─applicable::apd_pca(...)
7. └─applicable:::apd_pca.recipe(...)
8. ├─hardhat::mold(x, data)
9. └─hardhat:::mold.recipe(x, data)
10. ├─hardhat::run_mold(blueprint, data = data)
11. └─hardhat:::run_mold.default_recipe_blueprint(blueprint, data = data)
12. └─hardhat:::mold_recipe_default_process(...)
13. ├─recipes::prep(...)
14. └─recipes:::prep.recipe(...)
15. └─recipes:::check_training_set(training, x, fresh)
16. └─recipes::recipes_ptype_validate(...)
17. └─cli::cli_abort(msg, call = call)
18. └─rlang::abort(...)
[ FAIL 2 | WARN 0 | SKIP 3 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13